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Title Journal Year
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment Nature Ecology and Evolution 2024
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre Nature Communications 2024
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy bioRxiv (preprint) 2024
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes bioRxiv (preprint) 2024
Rapid bacteria-phage coevolution drives the emergence of multiscale networks Science 2023
Microbial and Viral Genome and Proteome Nitrogen Demand Varies Across Multiple Spatial Scales Within a Marine Oxygen Minimum Zone mSystems 2023
Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching Journal of Theoretical Biology 2023
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment bioRxiv (preprint) 2023
Metacommunity Structure Preserves Genome Diversity in the Presence of Gene-specific Selective Sweeps. bioRxiv (preprint) 2023
Complex marine microbial communities partition metabolism of scarce resources over the diel cycle Nature Ecology & Evolution. 2022
Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing. Ecology Letters 2022
Infect while the iron is scarce: nutrient-explicit phage-bacteria games Theoretical Ecology 2021
Topological constraints in early multicellularity favor reproductive division of labor eLife 2020
Functional and Comparative Genomic Analysis of Integrated Prophage-Like Sequences in “Candidatus Liberibacter asiaticus” mSphere 2019
Spatial Interactions and Oscillatory Tragedies of the Commons APS Physics 2019
Heterogeneous viral strategies promote coexistence in virus-microbe systems Journal of Theoretical Biology 2019
Viral invasion fitness across a continuum from lysis to latency Virus Evolution 2019
Optimal control policies for evolutionary dynamics with environmental feedback IEEE Conference on Decision and Control 2018
The Effect of Strain Level Diversity on Robust Inference of Virus-Induced Mortality of Phytoplankton Frontiers in Microbiology 2018
Limitations of correlation-based inference in complex virus-microbe communities mSystems 2018
An oscillating tragedy of the commons in replicator dynamics with game-environment feedback PNAS 2016
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer BMC Genomics 2016
A touch of sleep: biophysical model of contact-mediated dormancy of archaea by viruses Proceedings of the Royal Society B: Biological Sciences 2016
CRISPR-induced distributed immunity in microbial populations PloS One 2014
Coevolution can reverse predator-prey cycles PNAS 2014
Suppression of expression between adjacent genes within heterologous modules in yeast G3: Genes, Genomes, Genetics 2014
Critical cell wall hole size for lysis in Gram-positive bacteria Journal of the Royal Society Interface 2013
Phage-bacteria infection networks Trends in Microbiology 2013
A neutral theory of genome evolution and the frequency distribution of genes BMC Genomics 2012
Repeatability and contingency in the evolution of a key innovation in phage lambda Science 2012
Analysing threshold effects in the sexual dynamics of cyclically parthenogenetic rotifer populations Hydrobiologia 2011
Statistical structure of host-phage interactions PNAS 2011
Dynamics of nutrient uptake strategies: lessons from the tortoise and the hare Theoretical Ecology 2011
Genomic fluidity: an integrative view of gene diversity within microbial populations BMC Genomics 2011
Fluctuation domains in adaptive evolution Theoretical Population Biology 2010
Alternative stable states in host-phage dynamics Theoretical Ecology 2008
Evolutionary ecology of bacterial viruses Microbe 2008
The evolution of dispersal in reserve networks The American Naturalist 2007
Evolution, interactions, and biological networks PLoS One Biology 2007
Coevolutionary arms races between bacteria and bacteriophage PNAS 2005
Dynamics of a contact process with ontogeny Physical Review E 2004